Kenyon, Cynthia, and Coleen Murphy. (2006) 2006. “Enrichment of Regulatory Motifs Upstream of Predicted DAF-16 Targets.”. Nat Genet 38 (4): 397-8; author reply 398. doi:10.1038/ng0406-397.

Stein, Geneva, and Coleen Murphy. (2012) 2012. “The Intersection of Aging, Longevity Pathways, and Learning and Memory in C. Elegans.”. Front Genet 3: 259. doi:10.3389/fgene.2012.00259.

DiLoreto, Race, and Coleen Murphy. 2015. “The Cell Biology of Aging.”. Mol Biol Cell 26 (25): 4524-31. doi:10.1091/mbc.E14-06-1084.

Murphy, Coleen. (2006) 2006. “The Search for DAF-16 FOXO Transcriptional Targets: Approaches and Discoveries.”. Exp Gerontol 41 (10): 910-21. doi:10.1016/j.exger.2006.06.040.

Tepper, Ronald, Jasmine Ashraf, Rachel Kaletsky, Gunnar Kleemann, Coleen Murphy, and Harmen Bussemaker. 2013. “PQM-1 Complements DAF-16 As a Key Transcriptional Regulator of DAF-2-Mediated Development and Longevity.”. Cell 154 (3): 676-90. doi:10.1016/j.cell.2013.07.006.

Li, Ling-Bo, Haoyun Lei, Rachel Arey, Pengpeng Li, Jianfeng Liu, Coleen Murphy, X Xu, and Kang Shen. 2016. “The Neuronal Kinesin UNC-104 KIF1A Is a Key Regulator of Synaptic Aging and Insulin Signaling-Regulated Memory.”. Curr Biol 26 (5): 605-15. doi:10.1016/j.cub.2015.12.068.

Shaw, Wendy, Shijing Luo, Jessica Landis, Jasmine Ashraf, and Coleen Murphy. 2007. “The C. Elegans TGF-Beta Dauer Pathway Regulates Longevity via Insulin Signaling.”. Curr Biol 17 (19): 1635-45. doi:10.1016/j.cub.2007.08.058.

Caudy, Amy, Yuanfang Guan, Yue Jia, Christina Hansen, Chris DeSevo, Alicia Hayes, Joy Agee, et al. (2013) 2013. “A New System for Comparative Functional Genomics of Saccharomyces Yeasts.”. Genetics 195 (1): 275-87. doi:10.1534/genetics.113.152918.

Crocker, Amanda, Xiao-Juan Guan, Coleen Murphy, and Mala Murthy. 2016. “Cell-Type-Specific Transcriptome Analysis in the Drosophila Mushroom Body Reveals Memory-Related Changes in Gene Expression.”. Cell Rep 15 (7): 1580-96. doi:10.1016/j.celrep.2016.04.046.

Murphy, Coleen, Seung-Jae Lee, and Cynthia Kenyon. 2007. “Tissue Entrainment by Feedback Regulation of Insulin Gene Expression in the Endoderm of Caenorhabditis Elegans.”. Proc Natl Acad Sci U S A 104 (48): 19046-50. doi:10.1073/pnas.0709613104.

Murphy, Coleen, and Patrick Hu. 2013. “Insulin/Insulin-Like/Growth/Factor/Signaling/in/C./Elegans.”. WormBook, 1-43. doi:10.1895/wormbook.1.164.1.

Shi, Cheng, and Coleen Murphy. 2016. “Feeding the Germline.”. Genes Dev 30 (3): 249-50. doi:10.1101/gad.276980.115.

Chikina, Maria, Curtis Huttenhower, Coleen Murphy, and Olga Troyanskaya. (2009) 2009. “Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis Elegans.”. PLoS Comput Biol 5 (6): e1000417. doi:10.1371/journal.pcbi.1000417.

Tepper, Ronald, Coleen Murphy, and Harmen Bussemaker. (2014) 2014. “DAF-16 and PQM-1: Partners in Longevity.”. Aging (Albany NY) 6 (1): 5-6. doi:10.18632/aging.100628.

Arey, Rachel, and Coleen Murphy. 2017. “Conserved Regulators of Cognitive Aging: From Worms to Humans.”. Behav Brain Res 322 (Pt B): 299-310. doi:10.1016/j.bbr.2016.06.035.

Oliveira, Riva, Jess Abate, Kieran Dilks, Jessica Landis, Jasmine Ashraf, Coleen Murphy, and Keith Blackwell. 2009. “Condition-Adapted Stress and Longevity Gene Regulation by Caenorhabditis Elegans SKN-1 Nrf.”. Aging Cell 8 (5): 524-41. doi:10.1111/j.1474-9726.2009.00501.x.

Shi, Cheng, and Coleen Murphy. 2014. “Mating Induces Shrinking and Death in Caenorhabditis Mothers.”. Science 343 (6170): 536-40. doi:10.1126/science.1242958.

Son, Heehwa, Mihwa Seo, Seokjin Ham, Wooseon Hwang, Dongyeop Lee, Seon An, Murat Artan, et al. 2017. “RNA Surveillance via Nonsense-Mediated MRNA Decay Is Crucial for Longevity in Daf-2 Insulin IGF-1 Mutant C. Elegans.”. Nat Commun 8: 14749. doi:10.1038/ncomms14749.

Lee, Seung-Jae, Coleen Murphy, and Cynthia Kenyon. (2009) 2009. “Glucose Shortens the Life Span of C. Elegans by Downregulating DAF-16 FOXO Activity and Aquaporin Gene Expression.”. Cell Metab 10 (5): 379-91. doi:10.1016/j.cmet.2009.10.003.

de Abreu, Diana, Antonio Caballero, Pascal Fardel, Nicholas Stroustrup, Zhunan Chen, Kyunghwa Lee, William Keyes, et al. (2014) 2014. “An Insulin-to-Insulin Regulatory Network Orchestrates Phenotypic Specificity in Development and Physiology.”. PLoS Genet 10 (3): e1004225. doi:10.1371/journal.pgen.1004225.

Shi, Cheng, Alexi Runnels, and Coleen Murphy. (2017) 2017. “Mating and Male Pheromone Kill \textitCaenorhabditis Males through Distinct Mechanisms”. ELife 6. eLife Sciences Publications, Ltd: e23493. doi:10.7554/eLife.23493.

Heimbucher, Thomas, and Coleen Murphy. (2019) 2019. “Investigating Mechanisms That Control Ubiquitin-Mediated DAF-16 FOXO Protein Turnover.”. Methods Mol Biol 1890: 41-49. doi:10.1007/978-1-4939-8900-3_4.

Luo, Shijing, Wendy Shaw, Jasmine Ashraf, and Coleen Murphy. (2009) 2009. “TGF-Beta Sma Mab Signaling Mutations Uncouple Reproductive Aging from Somatic Aging.”. PLoS Genet 5 (12): e1000789. doi:10.1371/journal.pgen.1000789.

Stein, Geneva, and Coleen Murphy. (2014) 2014. “C. Elegans Positive Olfactory Associative Memory Is a Molecularly Conserved Behavioral Paradigm.”. Neurobiol Learn Mem 115: 86-94. doi:10.1016/j.nlm.2014.07.011.

Shi, Cheng, Alexi Runnels, and Coleen Murphy. 2016. “Mating-Induced Male Death and Pheromone Toxin-Regulated Androstasis”. BioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/034181.

Yao, Victoria, Rachel Kaletsky, William Keyes, Danielle Mor, Aaron Wong, Salman Sohrabi, Coleen Murphy, and Olga Troyanskaya. 2018. “An Integrative Tissue-Network Approach to Identify and Test Human Disease Genes.”. Nat Biotechnol. doi:10.1038/nbt.4246.

Landis, Jessica, and Coleen Murphy. (2010) 2010. “Integration of Diverse Inputs in the Regulation of Caenorhabditis Elegans DAF-16 FOXO.”. Dev Dyn 239 (5): 1405-12. doi:10.1002/dvdy.22244.

Li, Siran, Howard Stone, and Coleen Murphy. 2015. “A Microfluidic Device and Automatic Counting System for the Study of C. Elegans Reproductive Aging.”. Lab Chip 15 (2): 524-31. doi:10.1039/c4lc01028k.

Maliha, George, and Coleen Murphy. 2016. “A Simple Offspring-to-Mother Size Ratio Predicts Post-Reproductive Lifespan”. BioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/048835.

Tabuchi, Tomoko, Andreas Rechtsteiner, Tess Jeffers, Thea Egelhofer, Coleen Murphy, and Susan Strome. 2018. “Caenorhabditis Elegans Sperm Carry a Histone-Based Epigenetic Memory of Both Spermatogenesis and Oogenesis.”. Nat Commun 9 (1): 4310. doi:10.1038/s41467-018-06236-8.

Kauffman, Amanda, Jasmine Ashraf, Ryan Corces-Zimmerman, Jessica Landis, and Coleen Murphy. 2010. “Insulin Signaling and Dietary Restriction Differentially Influence the Decline of Learning and Memory With Age.”. PLoS Biol 8 (5): e1000372. doi:10.1371/journal.pbio.1000372.

Lakhina, Vanisha, Rachel Arey, Rachel Kaletsky, Amanda Kauffman, Geneva Stein, William Keyes, Daniel Xu, and Coleen Murphy. 2015. “Genome-Wide Functional Analysis of CREB Long-Term Memory-Dependent Transcription Reveals Distinct Basal and Memory Gene Expression Programs.”. Neuron 85 (2): 330-45. doi:10.1016/j.neuron.2014.12.029.

Shi, Cheng, Lauren Booth, Coleen Murphy, Matt Kaeberlein, Patricia Wittkopp, and George Sutphin. (2024) 2019. “Insulin-Like Peptides and the MTOR-TFEB Pathway Protect \textitCaenorhabditis Elegans Hermaphrodites from Mating-Induced Death”. ELife 8. eLife Sciences Publications, Ltd: e46413. doi:10.7554/eLife.46413.

Kaletsky, Rachel, Victoria Yao, April Williams, Alexi Runnels, Alicja Tadych, Shiyi Zhou, Olga Troyanskaya, and Coleen Murphy. (2018) 2018. “Transcriptome Analysis of Adult Caenorhabditis Elegans Cells Reveals Tissue-Specific Gene and Isoform Expression.”. PLoS Genet 14 (8): e1007559. doi:10.1371/journal.pgen.1007559.

Kaletsky, Rachel, and Coleen Murphy. (2010) 2010. “The Role of Insulin IGF-Like Signaling in C. Elegans Longevity and Aging.”. Dis Model Mech 3 (7-8): 415-9. doi:10.1242/dmm.001040.

Lakhina, Vanisha, and Coleen Murphy. 2015. “For Longevity, Perception Is Everything.”. Cell 160 (5): 807-9. doi:10.1016/j.cell.2015.02.027.

Murphy, Coleen. 2019. “Being Open to the Unexpected”. Mol Biol Cell.

Arey, Rachel, Geneva Stein, Rachel Kaletsky, Amanda Kauffman, and Coleen Murphy. 2018. “Activation of G Signaling Enhances Memory Consolidation and Slows Cognitive Decline.”. Neuron 98 (3): 562-574.e5. doi:10.1016/j.neuron.2018.03.039.

Luo, Shijing, Gunnar Kleemann, Jasmine Ashraf, Wendy Shaw, and Coleen Murphy. 2010. “TGF-β and Insulin Signaling Regulate Reproductive Aging via Oocyte and Germline Quality Maintenance.”. Cell 143 (2): 299-312. doi:10.1016/j.cell.2010.09.013.

Ewald, Collin, Jess Landis, Jess Abate, Coleen Murphy, and Keith Blackwell. 2015. “Dauer-Independent Insulin IGF-1-Signalling Implicates Collagen Remodelling in Longevity.”. Nature 519 (7541): 97-101. doi:10.1038/nature14021.

Templeman, N.M., V. Cota, W. Keyes, R. Kaletsky, and Coleen Murphy. 2020. “CREB Non-Autonomously Controls Reproductive Aging through Hedgehog Patched Signaling”. Dev Cell. Referenced from pubmed.ncbi.nlm.nih.gov: CREB Non-autonomously Controls Reproductive Aging through Hedgehog/Patched Signaling.

Templeman, Nicole, Shijing Luo, Rachel Kaletsky, Cheng Shi, Jasmine Ashraf, William Keyes, and Coleen Murphy. 2018. “Insulin Signaling Regulates Oocyte Quality Maintenance With Age via Cathepsin B Activity.”. Curr Biol 28 (5): 753-760.e4. doi:10.1016/j.cub.2018.01.052.

Murphy, Coleen. 2010. “Aging: MiRacles of Longevity?”. Curr Biol 20 (24). doi:10.1016/j.cub.2010.11.018.

Hahm, Jeong-Hoon, Sunhee Kim, Race DiLoreto, Cheng Shi, Seung-Jae Lee, Coleen Murphy, and Hong Nam. 2015. “C. Elegans Maximum Velocity Correlates With Healthspan and Is Maintained in Worms With an Insulin Receptor Mutation.”. Nat Commun 6: 8919. doi:10.1038/ncomms9919.

Hsu, Ao-Lin, Coleen Murphy, and Cynthia Kenyon. 2003. “Regulation of Aging and Age-Related Disease by DAF-16 and Heat-Shock Factor.”. Science 300 (5622): 1142-5. doi:10.1126/science.1083701.

Luo, Shijing, and Coleen Murphy. (2011) 2011. “Caenorhabditis Elegans Reproductive Aging: Regulation and Underlying Mechanisms.”. Genesis 49 (2): 53-65. doi:10.1002/dvg.20694.

Lakhina, Vanisha, and Coleen Murphy. 2015. “Genome Sequencing Fishes Out Longevity Genes.”. Cell 163 (6): 1312-3. doi:10.1016/j.cell.2015.11.040.

Murphy, Coleen, Steven McCarroll, Cornelia Bargmann, Andrew Fraser, Ravi Kamath, Julie Ahringer, Hao Li, and Cynthia Kenyon. 2003. “Genes That Act Downstream of DAF-16 to Influence the Lifespan of Caenorhabditis Elegans.”. Nature 424 (6946): 277-83. doi:10.1038/nature01789.

Rizki, Gizem, Terri Iwata, Ji Li, Christian Riedel, Colette Picard, Max Jan, Coleen Murphy, and Siu Lee. (2011) 2011. “The Evolutionarily Conserved Longevity Determinants HCF-1 and SIR-2.1 SIRT1 Collaborate to Regulate DAF-16 FOXO.”. PLoS Genet 7 (9): e1002235. doi:10.1371/journal.pgen.1002235.

Wang, Juan, Rachel Kaletsky, Malan Silva, April Williams, Leonard Haas, Rebecca Androwski, Jessica Landis, et al. 2015. “Cell-Specific Transcriptional Profiling of Ciliated Sensory Neurons Reveals Regulators of Behavior and Extracellular Vesicle Biogenesis.”. Curr Biol 25 (24): 3232-8. doi:10.1016/j.cub.2015.10.057.